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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG045000.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 257aa MW: 29008.9 Da PI: 9.6727 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.2 | 1.7e-31 | 36 | 85 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ Pavir.5NG045000.3.p 36 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 85 79***********************************************8 PP | |||||||
2 | K-box | 100 | 3.3e-33 | 104 | 201 | 4 | 100 |
K-box 4 ssgks.leeakaeslqqelakLkkeienLq.reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 s++ ++e +a+++qqe+akL++ i++Lq ++ R l+G+ ++++sl++L+qLe +Lek++ kiR++Knell++++e++qk+e +lq++n Pavir.5NG045000.3.p 104 SNS-GtVAEVNAQHYQQESAKLRQTISSLQnSNSRTLVGDAIQTMSLRDLKQLEGRLEKGIAKIRARKNELLYAEVEYMQKREMDLQSDN 192 233.25999*********************9899******************************************************** PP K-box 92 kaLrkklee 100 ++Lr+k++e Pavir.5NG045000.3.p 193 MYLRSKVAE 201 ******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.221 | 28 | 88 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.3E-41 | 28 | 87 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.12E-46 | 29 | 102 | No hit | No description |
SuperFamily | SSF55455 | 4.06E-33 | 29 | 100 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 30 | 84 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-33 | 30 | 50 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.8E-27 | 37 | 84 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-33 | 50 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-33 | 65 | 86 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.9E-23 | 113 | 199 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.768 | 114 | 205 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MLNMMADLSC GSSKVKEQQA PTGSGDKPGR GKIEIKRIEN TTNRQVTFCK RRNGLLKKAY 60 ELSVLCDAEV ALIVFSSRGR LYEYANNSVK ATIERYKKAN SDTSNSGTVA EVNAQHYQQE 120 SAKLRQTISS LQNSNSRTLV GDAIQTMSLR DLKQLEGRLE KGIAKIRARK NELLYAEVEY 180 MQKREMDLQS DNMYLRSKVA ENNERGQLPM NMMGAPSTSE YDHMAPYDSR NFLQVNIMQQ 240 PQHYSHQLQP TTLQLG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3p57_J | 3e-21 | 29 | 115 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3p57_I | 3e-21 | 29 | 115 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3p57_D | 3e-21 | 29 | 115 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3p57_C | 3e-21 | 29 | 115 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3p57_B | 3e-21 | 29 | 115 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3p57_A | 3e-21 | 29 | 115 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3kov_J | 3e-21 | 29 | 115 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3kov_I | 3e-21 | 29 | 115 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3kov_B | 3e-21 | 29 | 115 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3kov_A | 3e-21 | 29 | 115 | 1 | 90 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.4354 | 0.0 | leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU960810 | 0.0 | EU960810.1 Zea mays clone 228787 MADS-box transcription factor 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004968558.1 | 1e-180 | PREDICTED: MADS-box transcription factor 3 isoform X2 | ||||
Swissprot | Q40704 | 1e-154 | MADS3_ORYSJ; MADS-box transcription factor 3 | ||||
TrEMBL | A0A0A9TLG6 | 1e-172 | A0A0A9TLG6_ARUDO; Uncharacterized protein | ||||
STRING | Sb03g002525.1 | 1e-169 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-103 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG045000.3.p |