PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG045000.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MIKC_MADS
Protein Properties Length: 257aa    MW: 29008.9 Da    PI: 9.6727
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG045000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.21.7e-313685150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Pavir.5NG045000.3.p 36 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 85
                         79***********************************************8 PP
2K-box1003.3e-331042014100
                K-box   4 ssgks.leeakaeslqqelakLkkeienLq.reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                          s++   ++e +a+++qqe+akL++ i++Lq ++ R l+G+ ++++sl++L+qLe +Lek++ kiR++Knell++++e++qk+e +lq++n
  Pavir.5NG045000.3.p 104 SNS-GtVAEVNAQHYQQESAKLRQTISSLQnSNSRTLVGDAIQTMSLRDLKQLEGRLEKGIAKIRARKNELLYAEVEYMQKREMDLQSDN 192
                          233.25999*********************9899******************************************************** PP

                K-box  92 kaLrkklee 100
                          ++Lr+k++e
  Pavir.5NG045000.3.p 193 MYLRSKVAE 201
                          ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.2212888IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-412887IPR002100Transcription factor, MADS-box
CDDcd002651.12E-4629102No hitNo description
SuperFamilySSF554554.06E-3329100IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003084IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-333050IPR002100Transcription factor, MADS-box
PfamPF003199.8E-273784IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-335065IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-336586IPR002100Transcription factor, MADS-box
PfamPF014862.9E-23113199IPR002487Transcription factor, K-box
PROSITE profilePS5129713.768114205IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MLNMMADLSC GSSKVKEQQA PTGSGDKPGR GKIEIKRIEN TTNRQVTFCK RRNGLLKKAY  60
ELSVLCDAEV ALIVFSSRGR LYEYANNSVK ATIERYKKAN SDTSNSGTVA EVNAQHYQQE  120
SAKLRQTISS LQNSNSRTLV GDAIQTMSLR DLKQLEGRLE KGIAKIRARK NELLYAEVEY  180
MQKREMDLQS DNMYLRSKVA ENNERGQLPM NMMGAPSTSE YDHMAPYDSR NFLQVNIMQQ  240
PQHYSHQLQP TTLQLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3p57_J3e-2129115190Myocyte-specific enhancer factor 2A
3p57_I3e-2129115190Myocyte-specific enhancer factor 2A
3p57_D3e-2129115190Myocyte-specific enhancer factor 2A
3p57_C3e-2129115190Myocyte-specific enhancer factor 2A
3p57_B3e-2129115190Myocyte-specific enhancer factor 2A
3p57_A3e-2129115190Myocyte-specific enhancer factor 2A
3kov_J3e-2129115190Myocyte-specific enhancer factor 2A
3kov_I3e-2129115190Myocyte-specific enhancer factor 2A
3kov_B3e-2129115190Myocyte-specific enhancer factor 2A
3kov_A3e-2129115190Myocyte-specific enhancer factor 2A
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.43540.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9608100.0EU960810.1 Zea mays clone 228787 MADS-box transcription factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968558.11e-180PREDICTED: MADS-box transcription factor 3 isoform X2
SwissprotQ407041e-154MADS3_ORYSJ; MADS-box transcription factor 3
TrEMBLA0A0A9TLG61e-172A0A0A9TLG6_ARUDO; Uncharacterized protein
STRINGSb03g002525.11e-169(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-103MIKC_MADS family protein